Lucian,
this is not a bug. And I probably can explain why you are getting different results with the VNC Manager and native client.
In the VNC Manager the RDP connection properties screen has a combobox with resolutions. The list of the values presented in the combobox is the list of screen resolutions supported by the graphics card. And when you login to a remote computer via RDP, the Terminal Server installs a special graphics driver and reports only one resolution - the screen size of your RDP client. You can confirm it by opening the Display properties of a desktop you are viewing via RDP session. That's why you are getting the behavior you described.
On the other hand, native RDP viewer doesn't enumerate current screen resolutions supported by a graphics card and has that list hard-coded.
We are probably will move to the "hard-coded list" scheme too some time after next week to be released v3.0 release.